学术论文

EMRC论文成果统计（截止至2022年1月）

2022年

  1. Chen Pubo#, Huang Jie#, Rao Liuyu, Zhu Wengen, Yu Yuhe, Xiao Fanshu*, Yu Huang, Wu Yongjie, Hu Ruiwen, Liu Xingyu, He Zhili, Yan Qingyun*. Environmental effects of nanoparticles on the ecological succession of gut microbiota across zebrafish development. Science of the Total Environment, 2022, 806: 150963.
  2. Yu Huang, Yan Xizhe, Weng Wanlin, Xu Sihan, Xu Guizhi, Gu Tianyuan, Guan Xiaotong, Liu Shengwei, Chen Pubo, Wu Yongjie, Xiao Fanshu, Wang Cheng, Shu Longfei, Wu Bo, Qiu Dongru, He Zhili, Yan Qingyun*. Extracellular proteins of Desulfovibrio vulgaris as adsorbents and redox shuttles promote biomineralization of antimony. Journal of Hazardous Materials, 2022, 426: 127795.
  3. Yu Huang#, Zhong Qiuping#, Peng Yisheng, Zheng Xiafei, Xiao Fanshu, Wu Bo, Yu Xiaoli, Luo Zhiwen, Shu Longfei, Wang Cheng, Yan Qingyun*, He Zhili*. Environmental filtering by pH and salinity jointly drives prokaryotic community assembly in coastal wetland sediments. Frontiers in Marine Science, 2022, 8: 792294.
  4. Zhenzhen He, Ningchao Zheng, Lin Zhang, Yuehui Tian, Zhuofeng Hu *, Longfei Shu *. Efficient inactivation of intracellular bacteria in dormant amoeba spores by FeP, Journal of Hazardous Materials, 2022，425：127996

 

2021年

    1. Li Huabing, Zeng Jin*, Ren Lijuan, Yan Qingyun, Wu Qinglong L.*. Enhanced metabolic potentials and functional gene interactions of microbial stress responses to a 4,100-m elevational increase in freshwater lakes. Frontiers in Microbiology, 2021, 11: 595967.
    2. Ding Xiaowei, Liu kaihui*, Yan Qingyun, Liu Xingyu, Chen Ni, Wang Guoliang, He Shuai. Sugar and organic acid availability modulate soil diazotroph community assembly and species co-occurrence patterns on the Tibetan Plateau. Applied Microbiology and Biotechnology, 2021, 105: 8545-8560.
    3. Huang Zhijian#, Hou Dongwei#, Zhou Renjun, Zeng Shenzheng, Xing Chengguang, Wei Dongdong, Deng Xisha, Yu Lingfei, Wang Hao, Deng Zhixuan, Weng Shaoping, Ning Daliang, Xiao Chuanle, Yan Qingyun, Zhou Jizhong, He Zhili*, He Jianguo*. Environmental water and sediment microbial communities shape intestine microbiota for host health: the central dogma in an anthropogenic aquaculture ecosystem. Frontiers in Microbiology, 2021, 12: 772149.
    4. Fanshu Xiao, Lanjie Liao, Qiaoqing Xu, Zhili He, Tiaoyi Xiao, Jianjun Wang, Jie Huang, Yuhe Yu, Bo Wu and Qingyun Yan*. Environmental Microbiology. Host-microbiota interactions and responses to grass carp reovirus infection in Ctenopharyngodon idellus. 2021, 23(1), 431–447.
    5. Zhenzhen He, Luting Wang, Yuexian Ge, Siyi Zhang, Yuehui Tian, Xin Yang * and Longfei Shu**. 2021. Both viable and inactivated amoeba spores protect their intracellular bacteria from drinking water disinfection. Journal of Hazardous Materials (DOI:10.1016/j.jhazmat.2021.126006).
    6. Xiaoli Yu, Jiayin Zhou, Wen Song, Mengzhao Xu, Qiang He, Yisheng Peng, Yun Tian, Cheng Wang, Longfei Shu, Shanquan Wang, Qqingyun Yan, Jihua Liu, Qichao Tu and Zhili He*. 2021. SCycDB: A curated functional gene database for metagenomic profiling of sulphur cycling pathways. Molecular Ecology Resources (DOI: 10.1111/1755-0998.13306).
    7. Chao Jin, Lingan Zhao, Weigao Zhao, Luting Wang, Shishu Zhu, Zihan Xiao, Yijun Mo, Miaoyue Zhang, Longfei Shu* and Rongliang Qiu*. 2021. Transport and Retention of Free-Living Amoeba Spores in Porous Media: Effects of Operational Parameters and Extracellular Polymeric Substances. Environment Science & Technology (DOI: 10.1021/acs.est.1c00785)
    8. Pubo Chen, Jie Huang, Liuyu Rao, Wengen Zhu, Yuhe Yu, Fanshu Xiao, Xiaojuan Chen, Huang Yu, Yongjie Wu, Kui Xu, Xiafei Zheng, Ruiwen Hu, Zhili He, Qingyun Yan. 2021. Resistance and Resilience of Fish Gut Microbiota to Silver. mSystems. (DOI:10.1128/mSystems.00630-21)
    9.  Kui Xu, Zhou Li, Juneau Philippe, Fanshu Xiao, Yingli Lian, Wei Zhang, Longfei Shu, Haibo Jiang, Keke Zhang, Cheng Wang, Shanquan Wang, Qingyun Yan, and Zhili He*. 2021. Toxic and protective mechanisms of cyanobacterium Synechocystis sp. in response to titanium dioxide nanoparticles. Environmental Pollution (DOI:10.1016/j.envpol.2021.116508)
    10. Libin Zhao, Kui Xu, Juneau Philippe, Peihua Huang, Yingli Lian, Xiafei Zheng, Qiuping Zhong, Wei Zhang, Fanshu Xiao, Bo Wu, Qingyun Yan and Zhili He*. 2021. Light modulates the effect of antibiotic norfloxacin on photosynthetic processes of Microcystis aeruginosa. Aquatic Toxicology (DOI: 10.1016/j.aquatox.2021.105826).
    11. Longfei Shu, Zhenzhen He, Xiaotong Guan, Yang Xueqin, Yuehui Tian, Siyi Zhang, Chenyuan Wu, Zhili He, Qingyun Yan, Cheng Wang* and Yijing Shi*. 2021. A dormant amoeba species can selectively sense and predate on different soil bacteria. Functional Ecology (DOI: 10.1111/1365-2435.13824).
    12.  Zhiwei Liang, Wenwen Fang, Yukui Luo, Qihong Lu, Juneau Philippe, Zhili He, and Shanquan Wang*. 2021. Mechanistic insights into organic carbon-driven water blackening and odorization of urban rivers. Journal of Hazardous Materials(DOI: 10.1016/j.jhazmat.2020. 124663).
    13. Yijing Shi, Queller David C, Yuehui Tian, Siyi Zhang, Qingyun Yan, Zhili He, Zhenzhen He, Chenyuan Wu, Cheng Wang* and Longfei Shu*. 2021. The Ecology and Evolution of Amoeba-Bacterium Interactions. Applied Environmental Microbiology (DOI: 10.1128/AEM.01866-20).
    14. Bo Wu, Feifei  Liu, Wenwen Fang, Tony Yang,  Guanghao Chen, Zhili He* and Shanquan Wang. 2021. Microbial sulfur metabolism and environmental implications. Science of the Total Environment (DOI:10.1016/j.scitotenv.2021. 146085)
    15. Fanshu Xiao, Wenwen Zhu, Yuhe Yu, Zhili He, Bo Wu, Cheng Wang, Longfei Shu, Xinghao Li, Huaqun Yin, Jianjun Wang, Philippe Juneau, Xiafei Zheng, Yongjie Wu, Juan Li, Xiaojuan Chen, Dongwei Hou, Zhijian Huang, Jianguo He, Guohan Xu, Liwei Xie, Huang Jie*, Qingyun Yan*. 2021. Host development overwhelms environmental dispersal in governing the ecological succession of zebrafish gut microbiota. npj Biofilms and Microbiomes (DOI:10.1038 /s41522-020-00176-2).
    16. Rruiwen Hu, Haiming Zhao, Xihui Xu, Zhigang Wang, Keke Yu, Longfei Shu, Qingyun Yan, Bo Wu, Cehui Mo and Zhili He* and Cheng Wang. 2021. Bacteria-driven phthalic acid ester biodegradation: Current status and emerging opportunities. Environ Intl 154: 106560 (DOI: 10.1016/j.envint.2021.106560).
    17. Huang Yu, Xingyu Liu, Chao Yang, Yisheng Peng, Xiaoli Yu, Hang Gu, Xiafei Zheng, Cheng Wang, Fanshu Xiao, Longfei Shu, Zhili He, Bo Wu* and Qingyun Yan*. 2021. Co-symbiosis of arbuscular mycorrhizal fungi (AMF) and diazotrophs promote biological nitrogen fixation in mangrove ecosystems. Soil Biol Biochem (DOI: 10.1016/j. soilbio.2021.108382).
    18. Binhao Wang, Xiafei Zheng, Hangjun Zhang, Xiaoli Yu, Yingli Lian, Xueqin Yang,  Huang Yu, Ruiwen Hu, Zhili He, Fanshu Xiao* and Qingyun Yan*. 2021. Metagenomic insights into the effects of submerged plants on functional potential of microbial communities in wetland sediments. Marine Life Science Technology(DOI: 10.1007/s42995-021-00100-3).
    19. Yongyi Liang, Qihong Lu,  Zhiwei Liang, Xiaokun Liu, Wenwen Fang, Dawei Liang, Jialiang Kuang, Rongliang  Qiu, Zhili He and Shanquan Wang*. 2021. Substrate-dependent competition and cooperation relationships between Geobacter and Dehalococcoides for their organohalide respiration. ISME Commun (DOI: 10.1038/s43705-021-00025-z).
    20. Xiafei Zheng, Keke Zhang, Tony Yang, Zhili He, Longfei Shu, Fanshu Xiao, Yongjie Wu, Binhao Wang, Huang Yu and Qingyun Yan*. 2021. Sediment resuspension drives protist metacommunity structure and assembly in grass carp (Ctenopharyngodon idella) aquaculture ponds. Science of the Total Environment (DOI: 10.1016/j.scitotenv.2020.142840).
    21. Qihong Lu, Yongyi Liang, Wenwen Fang, Kelan Guan, Chenchen Huang, Zhiwei Liang, Xuemeng Qi, Yanhong Zeng, Xiaojun Luo, Bixian Mai, Zhili He and Shanquan Wang*. 2021. Spatial Distribution, Bioconversion and Ecological Risk of PCBs and PBDEs in the Surface Sediment of Contaminated Urban Rivers: A Nationwide Study. Environmental Science & Technology (DOI: 10.1021/acs.est.1c01095).
    22. Zhang Na, Juneau Philippe, Ruilin Huang, Zhili He, Sun Bo, Jizhong Zhou and Liang Yuting*. 2021. Coexistence between antibiotic resistance genes and metal resistance genes in manure-fertilized soils. Geoderma (DOI: 10.1016/j.geoderma. 2020.114760).
    23. Jiabao Li, Ting Xie, He Zhu, Jun Zhou, Chaonan Li, Wenjun Xiong, Lin Xu, Yanhong Wu, Zhili He and Xiangzhen Li*. 2021. Alkaline phosphatase activity mediates soil organic phosphorus mineralization in a subalpine forest ecosystem. Geoderma (DOI:10.1016/j.geoderma.2021.115376)
    24. Jiayin Zhou, Xiaoli Yu, Jihua Liu, Wei Qin, Zhili He, Stahl David, Nianzhi Jiao, Jizhong Zhou, Qichao Tu*. 2021. VB12Path for accurate metagenomic profiling of microbially driven cobalamin synthesis pathways. mSystems (DOI: 10.1128/mSystems.00497-21).
    25. Jiao Sun, Ziyu Lin, Daliang Ning*, Hui Wang, Zuotao Zhang, Zhili He and Jizhong Zhou . 2021. Functional microbial community structures and chemical properties indicated mechanisms and potential risks of urban river eco- remediation. Science of the Total Environment (DOI:10.1016/j.scitotenv.2021. 149868).
    26. Yu H, Deng Y, He Z, Pendall E, Carrillo Y, Wang S, Jin D, Wu L, Wang A, Xu Y, Liu B, Tai X and Zhou J. Stimulation of soil microbial functioning by elevated CO2 may 1 surpass effects mediated by irrigation in a semiarid grassland. Geoderma (DOI: 10.1016/j.geoderma.2021.115162).
    27.  Binhao Wang, Stirling Erinne, Zhili He, Bin Ma, Hangjun Zhang, Xiafei Zheng, Fanshu Xiao and Qingyun Yan. Pollution alters methanogenic and methanotrophic communities and increases dissolved methane in small ponds. Science of the Total Environment (DOI: 10.1016/j.scitotenv.2021.149723).
    28. Enze Li, Tongchu Deng, Lei Yan, Jizhong Zhou, Zhili He, Ye Deng and Meiying Xu. 2021. Elevated nitrate simplifies microbial community compositions and interactions in sulfide-rich river sediments. Science of the Total Environment (DOI: 10.1016/j.scitotenv.2020.141513).
    29. Qian Youfen, Meiying Xu, Tong chu Deng, Wenzhe Hu, Zhili He, Xunan Yang, Bin Wang, Da Song, Letian Chen, Youda Huang and Guoping Sun. 2021. Synergistic interactions of Desulfovibrio and Petrimonas for sulfate-reduction coupling polycyclic aromatic hydrocarbon degradation. Journal of Hazardous Materials(DOI: 10.1016/j.jhazmat.2020.124385).
    30. Huang Yu, Xiafei Zheng, Wanlin Weng, Xizhe Yan, Pubo Chen, Xingyu Liu, Tao Peng, Qiuping Zhong, Kui Xu, Cheng Wang, Longfei Shu, Tony Yang, Fanshu Xiao, Zhili He, Qingyun Yan. 2021. Synergistic effects of antimony and arsenic contaminations on bacterial, archaeal and fungal communities in the rhizosphere of Miscanthus sinensis: insights for nitrification and carbon mineralization. Journal of Hazardous Materials(DOI: 10.1016/j.jhazmat. 2021.125094).
    31. Mingyue Li, Anqi Fang, Xiaoli Yu, Keke Zhang, Zhili He, Cheng Wang, Yisheng Peng, Fanshu Xiao, Tony Yang, Wei Zhang, Xiafei Zheng, Qiuping Zhong, Xingyu Liu, Qingyun Yan. 2021. Microbially-driven sulfur cycling microbial communities in different mangrove sediments. Chemosphere(DOI:10.1016 /j.chemosphere.2020.128597).
    32. Mingyue Li, Jiachao Zhang, Xiao Yang, Yaoyu Zhou, Lihua Zhang, Yuan Yang, Lin Luo, Qingyun Yan. 2021. Responses of ammonia-oxidizing microorganisms to biochar and compost amendments of heavy metals-polluted soil. Journal of Environmental Sciences(DOI: 10.1016/j.jes.2020.09.029).
    33. Qihong Lu, Jinting Liu, Haozheng He, Zhiwei Liang, Rongliang Qiu and Shanquan Wang. 2021. Waste activated sludge stimulates in situ microbial reductive dehalogenation of organohalide-contaminated soil. Journal of  Hazardous Materials (DOI：10.1016/j.jhazmat.2021.125189).
    34. Rui Shen, Ling Yu, Pan Xu, Zhiwei Liang, Qihong Lu, Dawei Liang, Zhili He, Shanquan Wang. Water content as a primary parameter determines microbial reductive dechlorination activities in soil. Chemosphere (DOI:10.1016/j. chemosphere.2020.129152）. 
    35.  Zhiwei Liang, Guofang Xu, Jiangjian Shi, Sining Yu, Qihong Lu, Dawei Liang, Lianpeng Sun, Shanquan Wang. 2021. Sludge digestibility and functionally active microorganisms in methanogenic sludge digesters revealed by E. coli-fed digestion and microbial source tracking. Environmental Research (DOI: 10.1016/j.envres.2020.110539).
    36. Cheng Wang, Ruiwen Hu, Strong P.J., Wei Zhuang, Weiming Huang, Zhiwen Luo, Qingyun Yan, Zhili He and Longfei Shu*. 2021. Prevalence of Antibiotic Resistance Genes and Bacterial Pathogens along the Soil–Mangrove Root Continuum. Journal of Hazardous Materials (Doi:10.1016/j.jhazmat.2020.1 24985)
    37. Zhiwen Luo, Qiuping Zhong, Xingguo Han, Ruiwen Hu, Xingyu Liu, Wenjun Xu, Yongjie Wu, Weiming Huang, Zhengyuan Zhou, Wei Zhuang, Qingyun Yan, Zhili He, Cheng Wang*. 2021. Depth-dependent variability of biological nitrogen fixation and diazotrophic communities in mangrove sediments. Microbiome
    38. Zhengyuan Zhou, Ruiwen Hu, Yanmei Ni, Wei Zhuang, Zhiwen Luo, Weiming Huang, Qingyun Yan, Zhili He, Qiuping Zhong, Cheng Wang*. 2021.Genetic elucidation of quorum sensing and cobamide biosynthesis in divergent bacterial-fungal associations across the soil-mangrove root interface. Frontiers in Microbiology
    39. 焦念志，刘纪化, 石拓, 张传伦, 张永雨, 郑强, 陈泉睿, 汤凯, 王誉泽, 董海良, 唐剑武, 叶思源, 董双林, 高坤山, 张继红, 薛强, 李琦, 贺志理, 屠奇超, 王法明, 黄小平, 白雁, 潘德炉. 2021. 实施海洋负排放践行碳中和战略. 中国科学: 地球科学 51: 1–14(DOI: 10.1360/SSTe-2020-0358).
    40. 杨宇峰，罗洪添，王庆，贺志理，龙爱民. 2021.大型海藻规模栽培是增加海洋碳汇和解决近海环境问题的有效方法. 中国科学院院刊 36: 259-269 (DOI：10.16418/j.issn.1000-3045.20210217103).

 

2020年

1. Xue Guo, Qun Gao, Mengting Yuan, Gangsheng Wang, Xishu Zhou, Jiajie Feng, Zhou Shi, Lauren Hale, Linwei Wu, Aifen Zhou, Renmao Tian, Feifei Liu, Bo Wu, Lijun Chen, Chang Gyo Jung, Shuli Niu, Dejun Li, Xia Xu, Lifen Jiang, Arthur Escalas, Liyou Wu, Zhili He, Joy D. Van Nostrand, Daliang Ning, Xueduan Liu, Yunfeng Yang, Edward. A.G. Schuur, Konstantinos T. Konstantinidis, James R. Cole, C. Ryan Penton, Yiqi Luo, James M. Tiedje, Jizhong Zhou. 2020. Lower Soil Carbon Loss Due to Persistent Microbial Adaptation to Climate Warming. Nature Communications 11: 4897 (DOI: 10.1101/2020.02.23.961300).

2. Jiajie Feng, Cong Wang, Jiesi Lei, Yunfeng Yang, Qingyun Yan, Xishu Zhou, Xuanyu Tao, Daliang Ning, Mengting M. Yuan, Yujia Qin, Zhou J. Shi, Xue Guo, Zhili He, Joy D. Van Nostrand, Liyou Wu, Rosvel G. Bracho-Garillo, C. Ryan Penton, James R. Cole, Konstantinos T. Konstantinidis, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou. 2020. Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community. Microbiome 8: 3 (DOI: 10.1186/s40168-019-0778-3).

3. Renmao Tian, Daliang Ning, Zhili He, Ping Zhang, Sarah J. Spencer, Shuhong Gao, Weiling Shi, Linwei Wu, Ya Zhang, Yunfeng Yang, Benjamin G. Adams, Andrea M. Rocha, Brittny L. Detienne, Kenneth A. Lowe, Dominique C. Joyner, Dawn M. Klingeman, Adam P. Arkin, Matthew W. Fields, Terry C. Hazen, David A. Stahl, Eric J. Alm, Jizhong Zhou. 2020. Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. Microbiome 8: 51 (DOI: 10.1186/s40168-020-00825-w).

4. Wu, Bo, Feifei Liu, Aifen Zhou, Juan Li, Longfei Shu, Megan L. Kempher, Xueqin Yang, Feiyan Pan, Grant M. Zane, Judy D. Wall, Joy D. Van Nostrand, Philippe Juneau, Shouwen Chen, Qingyun Yan, Jizhong Zhou, Zhili He. 2020. Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris. The ISME Journal 14: 2862-2876 (DOI: 10.1038/s41396-020-00753-5).

5. Qiong Nan, Cheng Wang, Hao Wang, Qianqian Yi, Biqing Liang, Jun Xu, Weixiang Wu. 2020. Biochar drives microbially-mediated rice production by increasing soil carbon. Journal of Hazardous Materials 387: 121680 (DOI: 10.1016/j.jhazmat.2019.121680).

6. Zhili He, Ye Deng, Meiying Xu, Juan Li, Junyi Liang, Jinbo Xiong, Hao Yu, Bo Wu, Liyou Wu, Kai Xue, Shengjing Shi, Yolima Carrillo, Joy D. Van Nostrand, Sarah E. Hobbie, Peter B. Reich, Christopher W. Schadt, Angela D. Kent, Elise Pendall, Matthew Wallenstein, Yiqi Luo, Qingyun Yan, Jizhong Zhou. 2020. Microbial functional genes commonly respond to elevated carbon dioxide. Environment International 144: 106068 (DOI: 10.1016/j.envint.2020.106068).

7. Lan Qiu, Wenwen Fang, Haozheng He, Zhiwei Liang, Yangyue Zhan, Qihong Lu, Dawei Liang, Zhili He, Bi-Xian Mai, Shanquan Wang. 2020. Organohalide-respiring bacteria in polluted urban rivers employ novel bifunctional reductive dehalogenases to dechlorinate polychlorinated biphenyls and tetrachloroethene. Environmental Science & Technology 54: 8791-8800 (DOI: 10.1021/acs.est.0c01569).

8. Wei Zhuang, Xiaoli Yu, Ruiwen Hu, Zhiwen Luo, Xingyu Liu, Xiafei Zheng, Fanshu Xiao, Yisheng Peng, Qiang He, Yun Tian,Tony Yang, Shanquan Wang, Longfei Shu, Qingyun Yan, Cheng Wang, Zhili He. 2020. Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale. npj Biofilms and Microbiomes 6: 52 (DOI: 10.1038/s41522-020-00164-6).

9. Binhao Wang, Xiafei Zheng, Hangjun Zhang, Fanshu Xiao, Hang Gu, Keke Zhang, Zhili He, Xiang Liu, Qingyun Yan. 2020. Bacterial community responses to tourism development in the Xixi National Wetland Park. Science of the Total Environment 720: 137570 (DOI: 10.1016/j.scitotenv.2020.137570).

10. Xingyu Liu, Chao Yang, Xiaoli Yu, Huang Yu, Wei Zhuang, Hang Gu, Kui Xu, Xiafei Zheng, Cheng Wang, Fanshu Xiao, Bo Wu, Zhili He, Qingyun Yan. 2020. Revealing structure and assembly for rhizophyte-endophyte diazotrophic community in mangrove ecosystem after introduced Sonneratia apetala and Laguncularia racemosa. Science of the Total Environment 721: 137807 (DOI: 10.1016/j.scitotenv.2020.137807).

11. Yina Zou, Daliang Ning, Yong Huang, Yuting Liang, Hui Wang, Lei Duan, Tong Yuan, Zhili He, Yunfeng Yang, Kai Xueb, Joy D. Van Nostrand, Jizhong Zhou. 2020. Functional structures of soil microbial community relate to contrasting N2O emission patterns from a highly acidified forest. Science of the Total Environment 725: 138504 (DOI: 10.1016/j.scitotenv.2020.138504).

12. Xiaoli Yu, Xueqin Yang, Yongjie Wu, Yisheng Peng, Tony Yang, Fanshu Xiao, Qiuping Zhong, Kui Xu, Longfei Shu, Qiang He, Yun Tian, Qingyun Yan, Cheng Wang, Bo Wu, Zhili He. 2020. Sonneratia apetala introduction alters methane cycling microbial communities and increases methane emissions in mangrove ecosystems. Soil Biology and Biochemistry 144: 107775 (DOI: 10.1016/j.soilbio.2020.107775).

13. Yamina Pressler, JizhongZhou, ZhiliHe, Joy D.Van Nostrand, A. PeytonSmith. 2020. Post-agricultural tropical forest regeneration shifts soil microbial functional potential for carbon and nutrient cycling. Soil Biology and Biochemistry 145: 107784 (DOI: 10.1016/j.soilbio.2020.107784).

14. Qichao Tu, Qingyun Yan, Ye Deng, Sean T. Michaletz, Vanessa Buzzard, Michael D. Weiser, Robert Waide, Daliang Ning, Liyou Wu, Zhili He, Jizhong Zhou. 2020. Biogeographic patterns of microbial co-occurrence ecological networks in six American forests. Soil Biology and Biochemistry 148: 101897 (DOI: 10.1016/j.soilbio.2020.107897).

15. Binhao Wang, Xiafei Zheng, Hangjun Zhang, Fanshu Xiao, Zhili He, Qingyun Yan. 2020. Keystone taxa of water microbiome respond to environmental quality and predict water contamination. Environmental Research 187: 109666 (DOI: 10.1016/j.envres.2020.109666).  

16. Qiong Nan, Cheng Wang, Qianqian Yi, Lu Zhang, Fan Ping, Janice E. Thies, Weixiang Wu. 2020. Biochar amendment pyrolysed with rice straw increases rice production and mitigates methane emission over successive three years. Waste Management 118: 1-8 (DOI: 10.1016/j.wasman.2020.08.013).

17. Keke Zhang, Xiafei Zheng, Zhili He, Tony Yang, Longfei Shu, Fanshu Xiao, Yongjie Wu, Binhao Wang, Zhou Li, Pubo Chen, Qingyun Yan. 2020. Fish growth enhances microbial sulfur cycling in aquaculture pond sediments. Microbial Biotechnology 13: 1597-1610 (DOI: 10.1111/1751-7915.13622).

18. Yuexian Ge, Yu Lei, Xin Lei, Wenhui Gan, Longfei Shu, Xin Yang. 2020. Exploration of reaction rates of chlorine dioxide with tryptophan residue in oligopeptides and proteins. Journal of Environmental Sciences 93: 129-136 (DOI: 10.1016/j.jes.2020.03.059).

19. Yongjie Wu, Fanshu Xiao, Cheng Wang, Longfei Shu, Xiafei Zheng, Kui Xu, Xiaoli Yu, Keke Zhang, Hongtian Luo, Yufeng Yang, Zhili He, Qingyun Yan. 2020. The Beta- Diversity of Siganus fuscescens-Associated Microbial Communities from Different Habitats Increases with Body Weight. Frontiers in Microbiology 11: 1562 (DOI: 10.3389/fmicb.2020.01562).

20. Maria-Luisa Avila-Jimenez, Gavin Burns, Zhili He, Jizhong Zhou, Andrew Hodson, Jose-Luis Avila-Jimenez, David Pearce. 2020. Functional Associations and Resilience in Microbial Communities. Microorganisms 8: 951 (DOI: 10.3390/microorganisms8060951).

21. Qiuping Zhong, Dan Xue , Huai Chen, Liangfeng Liu, Yixin He, Dan Zhu, Zhili He. 2020. Structure and distribution of nitrite-dependent anaerobic methane oxidation bacteria vary with water tables in Zoige peatlands. FEMS Microbiology Ecology 96: fiaa039 (DOI: 10.1093/femsec/fiaa039).

22. Jiabao Li, Chaonan Li, Yongping Kou, Minjie Yao, Zhili He, Xiangzhen Li. 2020. Distinct mechanisms shape soil bacterial and fungal co-occurrence networks in Mountain Gongga. FEMS Microbiology Ecology 96: fiaa030 (DOI: 10.1093/femsec/fiaa030).

23. Huang Yu, Xizhe Yan, Xiafei Zheng, Kui Xu, Qiuping Zhong, Tony Yang, Feifei Liu, Cheng Wang, Longfei Shu, Zhili He, Fanshu Xiao, Qingyun Yan. 2020. Differential distribution of and similar biochemical responses to different species of arsenic and antimony in Vetiveria zizanioides. Environmental Geochemistry and Health 42: 3995-4010 (DOI: 10.1007/s10653-020-00658-4).

24. Tianyuan Gu, Huang Yu, Fang Li, Weimin.,Zeng, Xueling Wu, Li Shen, Yuandong Liu, Runlan Yu. Jiaokun Li. 2020. Antimony-oxidizing bacteria alleviate Sb stress in Arabidopsis by attenuating Sb toxicity and reducing Sb uptake. Plant Soil. 452: 397-412 (DOI: 10.1007/s11104-020-04569-2).

25. Da Dong, Cheng Wang, Lukas Van Zwieten, Hailong Wang, Peikun Jiang, Minmin Zhou, Weixiang Wu. 2020. An effective biochar-based slow-release fertilizer for reducing nitrogen loss in paddy fields. Journal of Soils and Sediments 20: 3027-3040 (DOI: 10.1007/s11368-019-02401-8).

26. Zhou Li, Philippe Juneau, Yingli Lian, Wei Zhang, Shanquan Wang, Cheng Wang, Longfei Shu, Qingyun Yan, Zhili He, Kui Xu. 2020. Effects of Titanium Dioxide Nanoparticles on Photosynthetic and Antioxidative Processes of Scenedesmus obliquus. Plants 9: 1748 (DOI: 10.3390/plants9121748).

27. Longfei Shu, Xinye Qian, Debra A. Brock, Katherine S. Geist, David C. Queller, Joan E. Strassmann. 2020. Loss and resiliency of social amoeba symbiosis under simulated warming. Ecology and Evolution 10: 13182-13189 (DOI: 10.1002/ece3.6909).

28. Xiafei Zheng, Yan Wang, Tony Yang, Zhili He, Qingyun Yan. 2020. Size-fractioned aggregates within phycosphere define functional bacterial communities related to Microcystis aeruginosa and Euglena sanguinea blooms. Aquatic Ecology 54: 609-623 (DOI: 10.1007/s10452-020-09762-0).

29. Yun Wang, Hua Zheng, Yunfeng Yang, Yuting Liang, Jizhong Zhou, Zhili He, Falin Chen, Zhiyun Ouyang. 2020. Microbial functional gene diversity in natural secondary forest Ultisols. Acta Oecologica-International Journal of Ecology 105: 103575 (DOI: 10.1016/j.actao.2020.103575).

30. 彭涛, 张斯仪, 王璐婷, 何祯珍, 舒龙飞. 2020. 阿米巴-细菌互作：进化、生态与环境效应. 微生物学报 60: 864-874 (DOI: 10.13343/j.cnki.wsxb.20190454).

 

2019年

1. Linwei Wu, Daliang Ning, Bing Zhang, Yong Li, Ping Zhang, Xiaoyu Shan, Qiuting Zhang, Mathew Brown, Zhenxin Li, Joy D. Van Nostrand, Fangqiong Ling, Naijia Xiao, Ya Zhang, Julia Vierheilig, George F. Wells, Yunfeng Yang, Ye Deng, Qichau Tu, Aijie Wang, Global Water Microbiome ConsortiumShow lessTong Zhang, Zhili He, Jurg Keller, Per Halkjær Nielsen, Pedro J. J. Alvarez, Craig S. Criddle, Michael Wagner, James M. Tiedje, Qiang He, Thomas P. Curtis, David A Stahl, Lisa Alvarez-Cohen, Bruce E. Rittmann, Xianghua Wen, Jizhong Zhou. 2019. Global Diversity and Biogeography of Bacterial Communities in Wastewater Treatment Plants. Nature Microbiology 4: 1183-1195 (DOI: 10.1038/s41564-019-0426-5).

2. Vanessa Buzzard, Sean T. Michaletz, Ye Deng, Zhili He, Daliang Ning, Lina Shen, Qichao Tu, Joy D. Van Nostrand, James W. Voordeckers, Jianjun Wang, Michael D. Weiser, Michael Kaspari, Robert B. Waide, Jizhong Zhou, Brian J. Enquist. 2019. Continental scale structuring of forest and soil diversity via functional traits. Nature Ecology & Evolution 3: 1607-1607 (DOI: 10.1038/s41559-019-1014-z).

3. Xue Guo, Xishu Zhou, Lauren Hale, Mengting Yuan, Daliang Ning, Jiajie Feng, Zhou Shi, Zhenxin Li, Bin Feng, Qun Gao, Linwei Wu, Weiling Shi, Aifen Zhou, Ying Fu, Liyou Wu, Zhili He, Joy D Van Nostrand, Guanzhou Qiu, Xueduan Liu, Yiqi Luo, James M Tiedje, Yunfeng Yang, Jizhong Zhou. 2019. Climate warming accelerates temporal scaling of grassland soil microbial biodiversity. Nature Ecology & Evolution 3: 612-619 (DOI: 10.1038/s41559-019-0848-8).

4. Huayu Qin, Shang Wang, Kai Feng, Zhili He, Marko P. J. Virta, Weiguo Hou, Hailiang Dong, Ye Deng. 2019. Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR. Microbiome 7: 71 (DOI: 10.1186/s40168-019-0688-4).

5. Eric R. Johnston, Janet K. Hatt, Zhili He, Liyou Wu, Xue Guo, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou, Konstantinos T. Konstantinidis. 2019. Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths. Proceedings of the National Academy of Sciences of The United States of America 116: 15096-15105 (DOI: 10.1073/pnas.1901307116).

6. Shaoqing Zhang, Zhili He, Fangang Meng. 2019. Floc-size effects of the pathogenic bacteria in a membrane bioreactor plant. Environment International 127: 645-652 (DOI: 10.1016/j.envint.2019.04.002).

7. Kui Xu, Francis Racine, Zhili He, Philippe Juneau. 2019. Impacts of hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor (mesotrione) on photosynthetic processes in Chlamydomonas reinhardtii. Environmental Pollution 244: 295-303 (DOI: 10.1016/j.envpol.2018.09.121).

8. Jiajie Feng, Christopher Penton, Zhili He, Joy D. Van Nostrand, Mengting M. Yuan, Liyou Wu, Cong Wang, Yujia Qin, Zhou J. Shi, Xue Guo, Edward A.G. Schuur, Yiqi Luo, Rosvel Bracho, Konstantinos T. Konstantinidis, James R. Cole, James M. Tiedje, Yunfeng Yang, Jizhong Zhou. 2019. Long-term warming in Alaska enlarges the diazotrophic community in deep soils. mBio 10: e02521-18 (DOI: 10.1128/mBio.02521-18).

9. Zhou Shi, Huaqun Yin, Joy D. Van Nostrand, James W. Voordeckers, Qichao Tu, Ye Deng, Mengting Yuan, Aifen Zhou, Ping Zhang, Naijia Xiao, Daliang Ning, Zhili He, Liyou Wu, Jizhong Zhou. 2019. Functional gene array-based ultrasensitive and quantitative detection of microbial populations in complex communities. mSystems 4: e00296-19 (DOI: 10.1128/mSystems.00296-19).

10. Qichao Tu, Lu Lin, Lei Cheng, Ye Deng, Zhili He. 2019. NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes. Bioinformatics 35: 1040-1048 (DOI: 10.1093/bioinformatics/bty741).

11. Hongtian Luo, Qing Wang, Zhili He, Yuhui Wua, Aimin Long, Yufeng Yang. 2019. Protection of dietary selenium-enriched seaweed Gracilaria lemaneiformis against cadmium toxicity to abalone Haliotis discus hannai. Ecotoxicology and Environmental Safety 171: 398-405 (DOI: 10.1016/j.ecoenv.2018.12.105).

12. Xiaolan Lin, Buce Hetharua, Lian Lin, Hong Xu, Tianling Zheng, Zhili He, Yun Tian. 2019. Mangrove Sediment Microbiome: Adaptive Microbial Assemblages and Their Routed Biogeochemical Processes in Yunxiao Mangrove National Nature Reserve, China. Microbial Ecology 78: 57-69 (DOI: 10.1007/s00248-018-1261-6).

13. Fanshu Xiao, Yonghong Bi, Xinghao Li, Jie Huang, Yuhe Yu, Zhicai Xie, Tao Fang, Xiuyun Cao, Zhili He, Philippe Juneau, Qingyun Yan. 2019. The Impact of Anthropogenic Disturbance on Bacterioplankton Communities During the Construction of Donghu Tunnel (Wuhan, China). Microbial Ecology 77: 277-287 (DOI: 10.1007/s00248-018-1222-0).

14. Michael D. Weiser, Daliang Ning, Vanessa Buzzard, Sean T. Michaletz, Zhili He, Brian J. Enquist, Robert B. Waide, Jizhong Zhou, Michael Kaspari. 2019. Thermal disruption of soil bacterial assemblages decreases diversity and assemblage similarity. Ecosphere 10: e02598 (DOI: 10.1002/ecs2.2598).

15. Xiafei Zheng, Yan Wang, Dongdong Zhang. 2019. Effects of microbial products and extra carbon on water quality and bacterial community in a fish polyculture system. Aquaculture Research 50: 1220-1229 (DOI: 10.1111/are.13996).

16. 朱文根, 李星浩,  饶刘瑜, 黄 洁, 余育和, 肖凡书, 颜庆云 . 2019. 感染草鱼呼肠孤病毒对肠道菌群多样性的影响. 水生生物学报 43: 115-123 (DOI: 10.7541/2019.014).

17. 庄炜, 杨雪琴, 于晓莉, 颜庆云, 连英丽, 王成, 钟秋萍, 贺志理. 2019. 微生物驱动的滨海湿地N2O产生及其机制研究进展. 微生物学通报 46: 3440-3452 (DOI: 10.13344/j.microbiol.china.190130).

18. 王彬浩, 关晓彤, 颜庆云, 贺志理. 2019. 含氟有机废水处理过程活性污泥微生物群落研究进展. 微生物学通报 46: 2020-2037 (DOI: 10.13344/j.microbiol.china.190330).

19. 邓婷, 关晓彤, 吴波, 贺志理. 2019. 数学模型在合成微生物群落构建中的应用. 应用与环境生物学报 26: 1-13 (DOI: 10.19675/j.cnki.1006-687x.2020.01009).

20. 方安琪, 贺志理 , 王成, 杨超, 颜庆云 . 2019. 红树林沉积物中微生物驱动硫循环研究进展. 微生物学报 60: 1-13 (DOI: 10.13343/j.cnki.wsxb.20190117).

 

2018年

1. Xue Guo, Jiajie Feng, Zhou Shi, Xishu Zhou, Mengting Yuan, Xuanyu Tao, Lauren Hale, Tong Yuan, Jianjun Wang, Yujia Qin, Aifen Zhou, Ying Fu, Liyou Wu, Zhili He, Joy D. Van Nostrand, Daliang Ning, Xueduan Liu, Yiqi Luo, James M. Tiedje, Yunfeng Yang, Jizhong Zhou. 2018. Climate warming leads to divergent succession of grassland microbial communities. Nature Climate Change 8: 813 (DOI: 10.1038/s41558-018-0254-2).

2. Shanquan Wang, Lan Qiu, Xiaowei Liu, Guofang Xu, Michael Siegert, Qihong Lu, Philippe Juneau, Ling Yu, Dawei Liang, Zhili He, Rongliang Qiu. 2018. Electron transport chains in organohalide-respiring bacteria and bioremediation implications. Biotechnology Advances 36: 1194-1206 (DOI: 10.1016/j.biotechadv.2018.03.018).

3. Casey Chen, Chris Hemme, Joan Beleno, Zhou Jason Shi, Daliang Ning, Yujia Qin, Qichao Tu, Michael Jorgensen, Zhili He, Liyou Wu, Jizhong Zhou. 2018. Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy. ISME Journal 12: 1210-1224 (DOI: 10.1038/s41396-017-0037-1).

4. Longfei Shu, Bojie Zhang, David C. Queller, Joan E. Strassmann. 2018. Burkholderia bacteria use chemotaxis to find social amoeba Dictyostelium discoideum hosts. ISME Journal 12: 1977-1993 (DOI: 10.1038/s41396-018-0147-4).

5. Mengting M Yuan, Jin Zhang, Kai Xue, Liyou Wu, Ye Deng, Jie Deng, Lauren Hale, Xishu Zhou, Zhili He, Yunfeng Yang, Joy D Van Nostrand, Edward A G Schuur, Konstantinos T Konstantinidis, Christopher R Penton, James R Cole, James M Tiedje, Yiqi Luo, Jizhong Zhou. 2018. Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil. Global Change Biology 24: 297-307 (DOI: 10.1111/gcb.13820).

6. Longfei Shu, Debra A Brock, Katherine S Geist, Jacob W Miller, David C Queller, Joan E Strassmann, Susanne DiSalvo. 2018. Symbiont location, host fitness, and possible coadaptation in a symbiosis between social amoebae and bacteria. eLife 7: e42660 (DOI: 10.7554/eLife.42660).

7. Zhili He, Ping Zhang, Linwei Wu, Andrea M. Rocha, Qichao Tu, Zhou Shi, Bo Wu, Yujia Qin, Jianjun Wang, Qingyun Yan, Daniel Curtis, Daliang Ning, Joy D. Van Nostrand, Liyou Wu, Yunfeng Yang, Dwayne A. Elias, David B. Watson, Michael W. W. Adams, Matthew W. Fields, Eric J. Alm, Terry C. Hazen, Paul D. Adams, Adam P. Arkin, Jizhong Zhou. 2018. Microbial functional gene diversity predicts groundwater contamination and ecosystem functioning. mBio 9: e02435-17 (DOI: 10.1128/mBio.02435-17).

8. Michael D. Weiser, Sean T. Michaletz, Vanessa Buzzard, Ye Deng, Zhili He, Lina Shen, Brian J. Enquist, Robert B. Waide, Jizhong Zhou, Michael Kaspari . 2018. Toward a theory for diversity gradients: the abundance - adaptation hypothesis. Ecography 41: 255-264 (DOI: 10.1111/ecog.02314).

9. Shengjing Shi, Donald J. Herman, Zhili He, Jennifer Pett-Ridge, Liyou Wu, Jizhong Zhou, Mary K. Firestone. 2018. Plant roots alter microbial functional genes supporting root litter decomposition. Soil Biology & Biochemistry 127: 90-99 (DOI: 10.1016/j.soilbio.2018.09.013).

10. Zhaoyang Chai, Zhili He, Yunyan Deng, Yufeng Yang, Yingzhong Tang. 2018. Cultivation of seaweed Gracilaria lemaneiformis enhanced biodiversity in a eukaryotic plankton community as revealed via metagenomic analyses. Molecular Ecology 27: 1081-1093 (DOI: 10.1111/mec.14496).

11. Ye Deng, Daliang Ning, Yujia Qin, Kai Xue, Liyou Wu, Zhili He, Huaqun Yin, Yuting Liang, Vanessa Buzzard, Sean T. Michaletz, Jizhong Zhou. 2018. Spatial scaling of forest soil microbial communities across a temperature gradient. Environmental Microbiology 20: 3504-3513 (DOI: 10.1111/1462-2920.14303).

12. Xinghao Li, Yuhe Yu, Chang Li, Qingyun Yan. 2018. Comparative study on the gut microbiotas of four economically important Asian carp species. Science China-Life Sciences 61: 696-705 (DOI: 10.1007/s11427-016-9296-5).

13. Bo Wu, Feifei Liu, Michael D. Weiser, Daliang Ning, Jordan G. Okie, Lina Shen, Juan Li, Benli Chai, Ye Deng, Kai Feng, Liyou Wu, Shouwen Chen, Jizhong Zhou, Zhili He. 2018. Temperature determines the diversity and structure of N2O-reducing microbial assemblages. Functional Ecology 32: 1867-1878 (DOI: 10.1111/1365-2435.13091).

14. Kaihui Liu, Xiaowei Ding, Xiaofei Tang, Jianjun Wang, Wenjun Li, Qingyun Yan, Zhenghua Liu. 2018. Macro and microelements drive diversity and composition of prokaryotic and fungal communities in hypersaline sediments and saline-alkaline soils. Frontiers in Microbiology 9: 352 (DOI: 10.3389/fmicb.2018.00352).

15. Hao Yu, Ye Deng, Zhili He, Joy D Van Nostrand, Shang Wang, Decai Jin, Aijie Wang, Liyou Wu, Daohan Wang, Xin Tai, Jizhong Zhou. 2018. Elevated CO2 and warming altered grassland microbial communities in soil top-layers. Frontiers in Microbiology 9: 1790 (DOI: 10.3389/fmicb.2018.01790).

16. Xue Guo, Xishu Zhou, Lauren Hale, Mengting Yuan, Jiajie Feng, Daliang Ning, Zhou Shi, Yujia Qin, Feifei Liu, Liyou Wu, Zhili He, Joy D. Van Nostrand, Xueduan Liu, Yiqi Luo, James M. Tiedje, Jizhong Zhou. 2018. Taxonomic and functional responses of soil microbial communities to annual removal of aboveground plant biomass. Frontiers in Microbiology 9: 954 (DOI: 10.3389/fmicb.2018.00954).

17. Xian Sun, Yizhi Cui, Qing Wang, Shengquan Tang, Xin Cao, Hongtian Luo, Zhili He, Xiaonong Hu, Xiangping Nie, Yufeng Yang, Tong Wang. 2018. Proteogenomic Analyses Revealed Favorable Metabolism Pattern Alterations in Rotifer Brachionus plicatilis Fed with Selenium-rich Chlorella. Journal of Agricultural and Food Chemistry 66: 6699-6707 (DOI: 10.1021/acs.jafc.8b00139).

18. Hao Yu, Zhili He, Aijie Wang, Jianping Xie, Liyou Wu, Joy D. Van Nostrand, Decai Jin, Zhimin Shao, Christopher W. Schadt, Jizhong Zhou, Ye Deng. 2018. Divergent responses of forest soil microbial communities under elevated CO2 in different depths of upper layers. Applied and Environmental Microbiology 84: e01694-17 (DOI: 10.1128/AEM.01694-17).

19. Kaifeng Li, Dongbo Cai, Zhangqian Wang, Zhili He, Shouwen Chena. 2018. Development of an efficient genome editing tool in Bacillus licheniformis using CRISPR-Cas9 nickase. Applied and Environmental Microbiology 84: e02608-17 (DOI: 10.1128/AEM.02608-17).

20. Weijing Zhu, Cheng Wang, Jaclyn Hill, Yangyang He, Bangyi Tao, Zhihua Mao, Weixiang Wu. 2018. A missing link in the estuarine nitrogen cycle?: Coupled nitrification-denitrification mediated by suspended particulate matter. Scientific Reports 8: 2282 (DOI: 10.1038/s41598-018-20688-4).

21. Dongwei Hou, Zhijian Huang, Shenzheng Zeng, Jian Liu, Dongdong Wei, Xisha Deng, Shaoping Weng, Qingyun Yan, Jianguo He. 2018. Intestinal bacterial signatures of white feces syndrome in shrimp. Applied Microbiology and Biotechnology 102: 3701-3709 (DOI: 10.1007/s00253-018-8855-2).

22. Bichan Li, Dongbo Cai, Shiying Hu, Anting Zhu, Zhili He, Shouwen Chen. 2018. Enhanced synthesis of poly-gamma-glutamic acid by increasing the intracellular reactive oxygen species in the Bacillus licheniformis 1-pyrroline-5-carboxylate dehydrogenase gene ycgN deficient strain. Applied Microbiology and Biotechnology 102: 10127-10137 (DOI: 10.1007/s00253-018-9372-z).

23. Hui Li, Zhuwen Xu, Qingyun Yan, Shan Yang, Joy D. Van Nostrand, Zhirui Wang, Zhili He, Jizhong Zhou, Yong Jiang, Ye Deng. 2018. Soil microbial beta-diversity is linked with compositional variation in aboveground plant biomass in a semi-arid grassland. Plant and Soil 423: 465-480 (DOI: 10.1007/s11104-017-3524-2).

24. Longfei Shu, Jie Qiu, Katja Räsänen. 2018. De novo oviduct transcriptome of the moor frog Rana arvalis: a quest for maternal effect candidate genes. PeerJ 6: e5452 (DOI: 10.7717/peerj.5452).

25. Min Li, Jun Zhang, Bo Wu, Zhongliang Zhou, Yongdong Xu. 2018. Identifying Keystone Species in the Microbial Community Based on Cross- Sectional Data. Current Gene Therapy 18: 296-306 (DOI: 10.2174/1566523218666181008155734).

26. Fanshu Xiao, Yuhe Yu, Jinjin Li, Philippe Juneau, Qingyun Yan. 2018. Necessary Sequencing Depth and Clustering Method to Obtain Relatively Stable Diversity Patterns in Studying Fish Gut Microbiota. Current Microbiology 75: 1240-1246 (DOI: 10.1007/s00284-018-1516-y).

27. 饶刘瑜, 李学梅, 李星浩, 朱文根, 余育和, 颜庆云. 2018. 转基因鲤鱼与对照鲤肠道微生物群落差异研究. 水生生物学报 42: 349-355 (DOI: 10.7541/2018.044).

28. 顾航，肖凡书，贺志理，颜庆云. 2018. 湿地微生物介导的甲烷排放机制. 微生物学报 58: 618-632 (DOI: 10.13343/j.cnki.wsxb.20170537 ).

29. 杨雪琴，连英丽，颜庆云，贺志理. 2018. 滨海湿地生态系统微生物驱动的氮循环研究进展. 微生物学报 58: 633-648 (DOI: 10.13343/j.cnki.wsxb.20170538 ).

 

2017年

1. Cheng Wang, Da Dong, P. J. Strong, Weijing Zhu, Zhuang Ma, Yong Qin, Weixiang Wu. 2017. Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes. Microbiome 5: 103 (DOI: 10.1186/s40168-017-0324-0).

2. Linwei Wu, Yunfeng Yang, Si Chen, Zhou Jason Shi, Mengxin Zhao, Zhenwei Zhu, Sihang Yang, Yuanyuan Qu, Qiao Ma, Zhili He, Jizhong Zhou, Qiang He. 2017. Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters. ISME Journal 11: 2874-2878 (DOI: 10.1038/ismej.2017.135).

3. Linwei Wu, Yunfeng Yang, Shiping Wang, Haowei Yue, Qiaoyan Lin, Yigang Hu, Zhili He, Joy D Van Nostrand, Lauren Hale, Xiangzhen Li, Jack A Gilbert and Jizhong Zhou. 2017. Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling. ISME Journal 11: 2102-2111 (DOI: 10.1038/ismej.2017.75).

4. Lei Cheng, Naifang Zhang, Mengting Yuan, Jing Xiao, Yujia Qin, Ye Deng, Qichao Tu, Kai Xue, Joy D. Van Nostrand, Liyou Wu, Zhili He, Xuhui Zhou, Mary Beth Leigh, Konstantinos T. Konstantinidis, Edward AG Schuur, Yiqi Luo, James M. Tiedje, Jizhong Zhou. 2017. Warming enhances old organic carbon decomposition through altering functional microbial communities. ISME Journal 11: 1825-1835 (DOI: 10.1038/ismej.2017.48).

5. Zihao Wu, Kaiheng Guo, Jingyun Fang, Xueqin Yang, Hong Xiao, Shaodong Hou, Xiujuan Kong, Chii Shang, Xin Yang, Fangang Meng, Liwei Chen. 2017. Factors affecting the roles of reactive species in the degradation of micropollutants by the UV/chlorine process. Water Research 126: 351-360 (DOI: 10.1016/j.watres.2017.09.028).

6. Ping Zhang, Zhili He, Joy D Van Nostrand, Yujia Qin, Ye Deng, Liyou Wu, Qichao Tu, Jianjun Wang, Christopher W Schadt, Matthew W Fields, Terry C Hazen, Adam P Arkin, David A Stahl, Jizhong Zhou. 2017. Dynamic succession of groundwater sulfate-reducing communities during prolonged reduction of uranium in a contaminated aquifer. Environmental Science & Technology 51: 3609-3620 (DOI: 10.1021/acs.est.6b02980).

7. Zaisheng Yan, Yuhong He, Haiyuan Cai, Joy D Van Nostrand, Zhili He, Jizhong Zhou, Lee R Krumholz,  He-Long Jiang. 2017. Interconnection of key microbial functional genes for enhanced benzo[a]pyrene biodegradation in sediments by microbial electrochemistry. Environmental Science & Technology 51: 8519-8529 (DOI: 10.1021/acs.est.7b00209).

8. Aifen Zhou, Rebecca Lau, Richard Baran, Jincai Ma, Frederick von Netzer, Weiling Shi, Drew Gorman-Lewis, Megan L. Kempher, Zhili He, Yujia Qin, Zhou Shi, Grant M. Zane, Liyou Wu, Benjamin P. Bowen, Trent R. Northen, Kristina L. Hillesland, David A. Stahl, Judy D. Wall, Adam P. Arkin, Jizhong Zhou. 2017. Key metabolites and mechanistic changes for salt tolerance in an experimentally evolved sulfate-reducing bacterium Desulfovibrio vulgaris. mBio 8: e01780-17 (DOI: 10.1128/mBio.01780-17).

9. Xinfei Xie, Zhili He, Xiaojuan Hu, Huaqun Yin, Xueduan Liu, Yufeng Yang. 2017. Large-scale seaweed cultivation diverges water and sediment microbial communities in the coast of Nan'ao Island, South China Sea. Science of the Total Environment 598: 97-108 (DOI: 10.1016/j.scitotenv.2017.03.233).

10. Hui Li, Shan Yang, Zhuwen Xu, Qingyun Yan, Xiaobin Li, Joy D. van Nostrand, Zhili He, Fei Yao, Xingguo Han, Jizhong Zhou, Ye Deng, Yong Jiang. 2017. Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation. Soil Biology and Biochemistry 104: 18-29 (DOI: 10.1016/j.soilbio.2016.10.009).

11. Qichao Tu, Zhili He, Liyou Wu, Kai Xue, Gary Xie, Patrick Chain, Peter B. Reich, Sarah E. Hobbie, Jizhong Zhou. 2017. Metagenomic reconstruction of nitrogen cycling pathways in a CO2-enriched grassland ecosystem. Soil Biology and Biochemistry 106: 99-108 (DOI: 10.1016/j.soilbio.2016.12.017).

12. Hui Li, Shan Yang, Zhuwen Xu, Qingyun Yan, Xiaobin Li, Joy D. van Nostrand, Zhili He, Fei Yao, Xingguo Han, Jizhong Zhou, Ye Deng, Yong Jiang. 2017. Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation. Soil Biology and Biochemistry 104: 18-29 (DOI: 10.1016/j.soilbio.2016.10.009).

13. Qingyun Yan, James C. Stegen, Yuhe Yu, Ye Deng, Xinghao Li, Shu Wu, Lili Dai, Xiang Zhang, Jinjin Li, Chun Wang, Jiajia Ni, Xuemei Li, Hongjuan Hu, Fanshu Xiao, Weisong Feng, Daliang Ning, Zhili He, Joy D. Van Nostrand, Liyou Wu, Jizhong Zhou. 2017. Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China). Molecular Ecology 26: 3839-3850 (DOI: 10.1111/mec.14151).

14. Kai Feng, Zhaojing Zhang, Weiwei Cai, Wenzong Liu, Meiying Xu, Huaqun Yin, Aijie Wang, Zhili He, Ye Deng. 2017. Biodiversity and species competition regulate the resilience of microbial biofilm community. Molecular Ecology 26: 6170-6182 (DOI: 10.1111/mec.14356).

15. Yao Minjie, Rui Junpeng, Niu Haishan, Hedenec Petr, Li Jiabao, He Zhili, Wang Junming, Cao Weidong, Li Xiangzhen. 2017. The differentiation of soil bacterial communities along a precipitation and temperature gradient in the eastern Inner Mongolia steppe. Catena 152: 47-56 (DOI: 10.1016/j.catena.2017.01.007).

16. Qihong Lu, Ling Yu, Zhiwei Liang, Qingyun Yan, Zhili He, Tiangang Luan, Dawei Liang, Shanquan Wang. 2017. Dehalococcoides as a potential biomarker evidence for uncharacterized organohalides in environmental samples. Frontiers in Microbiology 8: 1677 (DOI: 10.3389/fmicb.2017.01677).

17. Dongwei Hou, Zhijian Huang, Shenzheng Zeng, Jian Liu, Dongdong Wei, Xisha Deng, Shaoping Weng, Zhili He, Jianguo He. 2017. Environmental factors shape water microbial community structure and function in shrimp culture ecosystems. Frontiers in Microbiology 8: (DOI: 10.3389/fmicb.2017.02359).

18. Qihong Lu, Ling Yu, Zhiwei Liang, Qingyun Yan, Zhili He, Tiangang Luan, Dawei Liang, Shanquan Wang. 2017. Dehalococcoides as a potential biomarker evidence for uncharacterized organohalides in environmental samples. Frontiers in Microbiology 8: 1677 (DOI: 10.3389/fmicb.2017.01677).

19. Yu Wang, Rui Zhang, Zhili He, Joy D. Van Nostrand, Qiang Zheng, Jizhong Zhou, Nianzhi Jiao. 2017. Functional gene diversity and metabolic potential of the microbial community in an estuary-shelf environment. Frontiers in Microbiology 8: 1153 (DOI: 10.3389/fmicb.2017.01153).

20. Weijing Zhu, Cheng Wang, Faqian Sun, Liancheng Zhao, Wenjie Dou, Weixiang Wu. 2017. Overall bacterial community composition and abundance of nitrifiers and denitrifiers in a typical macrotidal estuary. Marine Pollution Bulletin 126: 540-548 (DOI: 10.1016/j.marpolbul.2017.09.062).

21. Hongchun Zhang, Rui Wang, Shu Chen, Gaofu Qi, Zhili He, Xiuyun Zhao. 2017. Microbial taxa and functional genes shift in degraded soil with bacterial wilt. Scientific Reports 7: 39911 (DOI: 10.1038/srep39911).

22. Xiaojuan Hu, Guoliang Wen, Yucheng Cao, Yingxue Gong, Zhuojia Li, Zhili He, Yufeng Yang. 2017. Metabolic and phylogenetic profiles of microbial communities from a mariculture base on the Chinese Guangzhou coast. Reviews in Fisheries Science & Aquaculture 83: 465–477 (DOI: 10.1007/s12562-017-1073-5).

23. Chengjun Zhu, Fang Xiao, Yimin Qiu, Qin Wang, Zhili He, Shouwen Chen. 2017. Lichenysin production is improved in codY null Bacillus licheniformis by addition of precursor amino acids. Applied Microbiology and Biotechnology 101: 6375-6383 (DOI: 10.1007/s00253-017-8352-z).

24. Qichao Tu, Jiabao Li, Zhou Shi, Yanfei Chen, Lu Lin, Juan Li, Hongling Wang, Jianbo Yan, Qingming Zhou, Xiangzhen Li, Lanjuan Li, Jizhong Zhou, Zhili He. 2017. HuMiChip2 for strain level identification and functional profiling of human microbiomes. Applied Microbiology and Biotechnology 101: 423-435 (DOI: 10.1007/s00253-016-7910-0).

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