Publications in 2020

1. Xue Guo, Qun Gao, Mengting Yuan, Gangsheng Wang, Xishu Zhou, Jiajie Feng, Zhou Shi, Lauren Hale, Linwei Wu, Aifen Zhou, Renmao Tian, Feifei Liu, Bo Wu, Lijun Chen, Chang Gyo Jung, Shuli Niu, Dejun Li, Xia Xu, Lifen Jiang, Arthur Escalas, Liyou Wu, Zhili He, Joy D. Van Nostrand, Daliang Ning, Xueduan Liu, Yunfeng Yang, Edward. A.G. Schuur, Konstantinos T. Konstantinidis, James R. Cole, C. Ryan Penton, Yiqi Luo, James M. Tiedje, Jizhong Zhou. 2020. Lower Soil Carbon Loss Due to Persistent Microbial Adaptation to Climate Warming. Nature Communications 11: 4897 (DOI: 10.1101/2020.02.23.961300).

2. Jiajie Feng, Cong Wang, Jiesi Lei, Yunfeng Yang, Qingyun Yan, Xishu Zhou, Xuanyu Tao, Daliang Ning, Mengting M. Yuan, Yujia Qin, Zhou J. Shi, Xue Guo, Zhili He, Joy D. Van Nostrand, Liyou Wu, Rosvel G. Bracho-Garillo, C. Ryan Penton, James R. Cole, Konstantinos T. Konstantinidis, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou. 2020. Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community. Microbiome 8: 3 (DOI: 10.1186/s40168-019-0778-3).

3. Renmao Tian, Daliang Ning, Zhili He, Ping Zhang, Sarah J. Spencer, Shuhong Gao, Weiling Shi, Linwei Wu, Ya Zhang, Yunfeng Yang, Benjamin G. Adams, Andrea M. Rocha, Brittny L. Detienne, Kenneth A. Lowe, Dominique C. Joyner, Dawn M. Klingeman, Adam P. Arkin, Matthew W. Fields, Terry C. Hazen, David A. Stahl, Eric J. Alm, Jizhong Zhou. 2020. Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. Microbiome 8: 51 (DOI: 10.1186/s40168-020-00825-w).

4. Wu, Bo, Feifei Liu, Aifen Zhou, Juan Li, Longfei Shu, Megan L. Kempher, Xueqin Yang, Feiyan Pan, Grant M. Zane, Judy D. Wall, Joy D. Van Nostrand, Philippe Juneau, Shouwen Chen, Qingyun Yan, Jizhong Zhou, Zhili He. 2020. Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris. The ISME Journal 14: 2862-2876 (DOI: 10.1038/s41396-020-00753-5).

5. Qiong Nan, Cheng Wang, Hao Wang, Qianqian Yi, Biqing Liang, Jun Xu, Weixiang Wu. 2020. Biochar drives microbially-mediated rice production by increasing soil carbon. Journal of Hazardous Materials 387: 121680 (DOI: 10.1016/j.jhazmat.2019.121680).

6. Zhili He, Ye Deng, Meiying Xu, Juan Li, Junyi Liang, Jinbo Xiong, Hao Yu, Bo Wu, Liyou Wu, Kai Xue, Shengjing Shi, Yolima Carrillo, Joy D. Van Nostrand, Sarah E. Hobbie, Peter B. Reich, Christopher W. Schadt, Angela D. Kent, Elise Pendall, Matthew Wallenstein, Yiqi Luo, Qingyun Yan, Jizhong Zhou. 2020. Microbial functional genes commonly respond to elevated carbon dioxide. Environment International 144: 106068 (DOI: 10.1016/j.envint.2020.106068).

7. Lan Qiu, Wenwen Fang, Haozheng He, Zhiwei Liang, Yangyue Zhan, Qihong Lu, Dawei Liang, Zhili He, Bi-Xian Mai, Shanquan Wang. 2020. Organohalide-respiring bacteria in polluted urban rivers employ novel bifunctional reductive dehalogenases to dechlorinate polychlorinated biphenyls and tetrachloroethene. Environmental Science & Technology 54: 8791-8800 (DOI: 10.1021/acs.est.0c01569).

8. Wei Zhuang, Xiaoli Yu, Ruiwen Hu, Zhiwen Luo, Xingyu Liu, Xiafei Zheng, Fanshu Xiao, Yisheng Peng, Qiang He, Yun Tian,Tony Yang, Shanquan Wang, Longfei Shu, Qingyun Yan, Cheng Wang, Zhili He. 2020. Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale. npj Biofilms and Microbiomes 6: 52 (DOI: 10.1038/s41522-020-00164-6).

9. Binhao Wang, Xiafei Zheng, Hangjun Zhang, Fanshu Xiao, Hang Gu, Keke Zhang, Zhili He, Xiang Liu, Qingyun Yan. 2020. Bacterial community responses to tourism development in the Xixi National Wetland Park. Science of the Total Environment 720: 137570 (DOI: 10.1016/j.scitotenv.2020.137570).

10. Xingyu Liu, Chao Yang, Xiaoli Yu, Huang Yu, Wei Zhuang, Hang Gu, Kui Xu, Xiafei Zheng, Cheng Wang, Fanshu Xiao, Bo Wu, Zhili He, Qingyun Yan. 2020. Revealing structure and assembly for rhizophyte-endophyte diazotrophic community in mangrove ecosystem after introduced Sonneratia apetala and Laguncularia racemosa. Science of the Total Environment 721: 137807 (DOI: 10.1016/j.scitotenv.2020.137807).

11. Yina Zou, Daliang Ning, Yong Huang, Yuting Liang, Hui Wang, Lei Duan, Tong Yuan, Zhili He, Yunfeng Yang, Kai Xueb, Joy D. Van Nostrand, Jizhong Zhou. 2020. Functional structures of soil microbial community relate to contrasting N2O emission patterns from a highly acidified forest. Science of the Total Environment 725: 138504 (DOI: 10.1016/j.scitotenv.2020.138504).

12. Xiaoli Yu, Xueqin Yang, Yongjie Wu, Yisheng Peng, Tony Yang, Fanshu Xiao, Qiuping Zhong, Kui Xu, Longfei Shu, Qiang He, Yun Tian, Qingyun Yan, Cheng Wang, Bo Wu, Zhili He. 2020. Sonneratia apetala introduction alters methane cycling microbial communities and increases methane emissions in mangrove ecosystems. Soil Biology and Biochemistry 144: 107775 (DOI: 10.1016/j.soilbio.2020.107775).

13. Yamina Pressler, JizhongZhou, ZhiliHe, Joy D.Van Nostrand, A. PeytonSmith. 2020. Post-agricultural tropical forest regeneration shifts soil microbial functional potential for carbon and nutrient cycling. Soil Biology and Biochemistry 145: 107784 (DOI: 10.1016/j.soilbio.2020.107784).

14. Qichao Tu, Qingyun Yan, Ye Deng, Sean T. Michaletz, Vanessa Buzzard, Michael D. Weiser, Robert Waide, Daliang Ning, Liyou Wu, Zhili He, Jizhong Zhou. 2020. Biogeographic patterns of microbial co-occurrence ecological networks in six American forests. Soil Biology and Biochemistry 148: 101897 (DOI: 10.1016/j.soilbio.2020.107897).

15. Binhao Wang, Xiafei Zheng, Hangjun Zhang, Fanshu Xiao, Zhili He, Qingyun Yan. 2020. Keystone taxa of water microbiome respond to environmental quality and predict water contamination. Environmental Research 187: 109666 (DOI: 10.1016/j.envres.2020.109666).  

16. Qiong Nan, Cheng Wang, Qianqian Yi, Lu Zhang, Fan Ping, Janice E. Thies, Weixiang Wu. 2020. Biochar amendment pyrolysed with rice straw increases rice production and mitigates methane emission over successive three years. Waste Management 118: 1-8 (DOI: 10.1016/j.wasman.2020.08.013).

17. Keke Zhang, Xiafei Zheng, Zhili He, Tony Yang, Longfei Shu, Fanshu Xiao, Yongjie Wu, Binhao Wang, Zhou Li, Pubo Chen, Qingyun Yan. 2020. Fish growth enhances microbial sulfur cycling in aquaculture pond sediments. Microbial Biotechnology 13: 1597-1610 (DOI: 10.1111/1751-7915.13622).

18. Yuexian Ge, Yu Lei, Xin Lei, Wenhui Gan, Longfei Shu, Xin Yang. 2020. Exploration of reaction rates of chlorine dioxide with tryptophan residue in oligopeptides and proteins. Journal of Environmental Sciences 93: 129-136 (DOI: 10.1016/j.jes.2020.03.059).

19. Yongjie Wu, Fanshu Xiao, Cheng Wang, Longfei Shu, Xiafei Zheng, Kui Xu, Xiaoli Yu, Keke Zhang, Hongtian Luo, Yufeng Yang, Zhili He, Qingyun Yan. 2020. The Beta- Diversity of Siganus fuscescens-Associated Microbial Communities from Different Habitats Increases with Body Weight. Frontiers in Microbiology 11: 1562 (DOI: 10.3389/fmicb.2020.01562).

20. Maria-Luisa Avila-Jimenez, Gavin Burns, Zhili He, Jizhong Zhou, Andrew Hodson, Jose-Luis Avila-Jimenez, David Pearce. 2020. Functional Associations and Resilience in Microbial Communities. Microorganisms 8: 951 (DOI: 10.3390/microorganisms8060951).

21. Qiuping Zhong, Dan Xue , Huai Chen, Liangfeng Liu, Yixin He, Dan Zhu, Zhili He. 2020. Structure and distribution of nitrite-dependent anaerobic methane oxidation bacteria vary with water tables in Zoige peatlands. FEMS Microbiology Ecology 96: fiaa039 (DOI: 10.1093/femsec/fiaa039).

22. Jiabao Li, Chaonan Li, Yongping Kou, Minjie Yao, Zhili He, Xiangzhen Li. 2020. Distinct mechanisms shape soil bacterial and fungal co-occurrence networks in Mountain Gongga. FEMS Microbiology Ecology 96: fiaa030 (DOI: 10.1093/femsec/fiaa030).

23. Huang Yu, Xizhe Yan, Xiafei Zheng, Kui Xu, Qiuping Zhong, Tony Yang, Feifei Liu, Cheng Wang, Longfei Shu, Zhili He, Fanshu Xiao, Qingyun Yan. 2020. Differential distribution of and similar biochemical responses to different species of arsenic and antimony in Vetiveria zizanioides. Environmental Geochemistry and Health 42: 3995-4010 (DOI: 10.1007/s10653-020-00658-4).

24. Tianyuan Gu, Huang Yu, Fang Li, Weimin.,Zeng, Xueling Wu, Li Shen, Yuandong Liu, Runlan Yu. Jiaokun Li. 2020. Antimony-oxidizing bacteria alleviate Sb stress in Arabidopsis by attenuating Sb toxicity and reducing Sb uptake. Plant Soil. 452: 397-412 (DOI: 10.1007/s11104-020-04569-2).

25. Da Dong, Cheng Wang, Lukas Van Zwieten, Hailong Wang, Peikun Jiang, Minmin Zhou, Weixiang Wu. 2020. An effective biochar-based slow-release fertilizer for reducing nitrogen loss in paddy fields. Journal of Soils and Sediments 20: 3027-3040 (DOI: 10.1007/s11368-019-02401-8).

26. Zhou Li, Philippe Juneau, Yingli Lian, Wei Zhang, Shanquan Wang, Cheng Wang, Longfei Shu, Qingyun Yan, Zhili He, Kui Xu. 2020. Effects of Titanium Dioxide Nanoparticles on Photosynthetic and Antioxidative Processes of Scenedesmus obliquus. Plants 9: 1748 (DOI: 10.3390/plants9121748).

27. Longfei Shu, Xinye Qian, Debra A. Brock, Katherine S. Geist, David C. Queller, Joan E. Strassmann. 2020. Loss and resiliency of social amoeba symbiosis under simulated warming. Ecology and Evolution 10: 13182-13189 (DOI: 10.1002/ece3.6909).

28. Xiafei Zheng, Yan Wang, Tony Yang, Zhili He, Qingyun Yan. 2020. Size-fractioned aggregates within phycosphere define functional bacterial communities related to Microcystis aeruginosa and Euglena sanguinea blooms. Aquatic Ecology 54: 609-623 (DOI: 10.1007/s10452-020-09762-0).

29. Yun Wang, Hua Zheng, Yunfeng Yang, Yuting Liang, Jizhong Zhou, Zhili He, Falin Chen, Zhiyun Ouyang. 2020. Microbial functional gene diversity in natural secondary forest Ultisols. Acta Oecologica-International Journal of Ecology 105: 103575 (DOI: 10.1016/j.actao.2020.103575).