Publications in 2019

1. Linwei Wu, Daliang Ning, Bing Zhang, Yong Li, Ping Zhang, Xiaoyu Shan, Qiuting Zhang, Mathew Brown, Zhenxin Li, Joy D. Van Nostrand, Fangqiong Ling, Naijia Xiao, Ya Zhang, Julia Vierheilig, George F. Wells, Yunfeng Yang, Ye Deng, Qichau Tu, Aijie Wang, Global Water Microbiome ConsortiumShow lessTong Zhang, Zhili He, Jurg Keller, Per Halkjær Nielsen, Pedro J. J. Alvarez, Craig S. Criddle, Michael Wagner, James M. Tiedje, Qiang He, Thomas P. Curtis, David A Stahl, Lisa Alvarez-Cohen, Bruce E. Rittmann, Xianghua Wen, Jizhong Zhou. 2019. Global Diversity and Biogeography of Bacterial Communities in Wastewater Treatment Plants. Nature Microbiology 4: 1183-1195 (DOI: 10.1038/s41564-019-0426-5).

2. Vanessa Buzzard, Sean T. Michaletz, Ye Deng, Zhili He, Daliang Ning, Lina Shen, Qichao Tu, Joy D. Van Nostrand, James W. Voordeckers, Jianjun Wang, Michael D. Weiser, Michael Kaspari, Robert B. Waide, Jizhong Zhou, Brian J. Enquist. 2019. Continental scale structuring of forest and soil diversity via functional traits. Nature Ecology & Evolution 3: 1607-1607 (DOI: 10.1038/s41559-019-1014-z).

3. Xue Guo, Xishu Zhou, Lauren Hale, Mengting Yuan, Daliang Ning, Jiajie Feng, Zhou Shi, Zhenxin Li, Bin Feng, Qun Gao, Linwei Wu, Weiling Shi, Aifen Zhou, Ying Fu, Liyou Wu, Zhili He, Joy D Van Nostrand, Guanzhou Qiu, Xueduan Liu, Yiqi Luo, James M Tiedje, Yunfeng Yang, Jizhong Zhou. 2019. Climate warming accelerates temporal scaling of grassland soil microbial biodiversity. Nature Ecology & Evolution 3: 612-619 (DOI: 10.1038/s41559-019-0848-8).

4. Huayu Qin, Shang Wang, Kai Feng, Zhili He, Marko P. J. Virta, Weiguo Hou, Hailiang Dong, Ye Deng. 2019. Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR. Microbiome 7: 71 (DOI: 10.1186/s40168-019-0688-4).

5. Eric R. Johnston, Janet K. Hatt, Zhili He, Liyou Wu, Xue Guo, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou, Konstantinos T. Konstantinidis. 2019. Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths. Proceedings of the National Academy of Sciences of The United States of America 116: 15096-15105 (DOI: 10.1073/pnas.1901307116).

6. Shaoqing Zhang, Zhili He, Fangang Meng. 2019. Floc-size effects of the pathogenic bacteria in a membrane bioreactor plant. Environment International 127: 645-652 (DOI: 10.1016/j.envint.2019.04.002).

7. Kui Xu, Francis Racine, Zhili He, Philippe Juneau. 2019. Impacts of hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor (mesotrione) on photosynthetic processes in Chlamydomonas reinhardtii. Environmental Pollution 244: 295-303 (DOI: 10.1016/j.envpol.2018.09.121).

8. Jiajie Feng, Christopher Penton, Zhili He, Joy D. Van Nostrand, Mengting M. Yuan, Liyou Wu, Cong Wang, Yujia Qin, Zhou J. Shi, Xue Guo, Edward A.G. Schuur, Yiqi Luo, Rosvel Bracho, Konstantinos T. Konstantinidis, James R. Cole, James M. Tiedje, Yunfeng Yang, Jizhong Zhou. 2019. Long-term warming in Alaska enlarges the diazotrophic community in deep soils. mBio 10: e02521-18 (DOI: 10.1128/mBio.02521-18).

9. Zhou Shi, Huaqun Yin, Joy D. Van Nostrand, James W. Voordeckers, Qichao Tu, Ye Deng, Mengting Yuan, Aifen Zhou, Ping Zhang, Naijia Xiao, Daliang Ning, Zhili He, Liyou Wu, Jizhong Zhou. 2019. Functional gene array-based ultrasensitive and quantitative detection of microbial populations in complex communities. mSystems 4: e00296-19 (DOI: 10.1128/mSystems.00296-19).

10. Qichao Tu, Lu Lin, Lei Cheng, Ye Deng, Zhili He. 2019. NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes. Bioinformatics 35: 1040-1048 (DOI: 10.1093/bioinformatics/bty741).

11. Hongtian Luo, Qing Wang, Zhili He, Yuhui Wua, Aimin Long, Yufeng Yang. 2019. Protection of dietary selenium-enriched seaweed Gracilaria lemaneiformis against cadmium toxicity to abalone Haliotis discus hannai. Ecotoxicology and Environmental Safety 171: 398-405 (DOI: 10.1016/j.ecoenv.2018.12.105).

12. Xiaolan Lin, Buce Hetharua, Lian Lin, Hong Xu, Tianling Zheng, Zhili He, Yun Tian. 2019. Mangrove Sediment Microbiome: Adaptive Microbial Assemblages and Their Routed Biogeochemical Processes in Yunxiao Mangrove National Nature Reserve, China. Microbial Ecology 78: 57-69 (DOI: 10.1007/s00248-018-1261-6).

13. Fanshu Xiao, Yonghong Bi, Xinghao Li, Jie Huang, Yuhe Yu, Zhicai Xie, Tao Fang, Xiuyun Cao, Zhili He, Philippe Juneau, Qingyun Yan. 2019. The Impact of Anthropogenic Disturbance on Bacterioplankton Communities During the Construction of Donghu Tunnel (Wuhan, China). Microbial Ecology 77: 277-287 (DOI: 10.1007/s00248-018-1222-0).

14. Michael D. Weiser, Daliang Ning, Vanessa Buzzard, Sean T. Michaletz, Zhili He, Brian J. Enquist, Robert B. Waide, Jizhong Zhou, Michael Kaspari. 2019. Thermal disruption of soil bacterial assemblages decreases diversity and assemblage similarity. Ecosphere 10: e02598 (DOI: 10.1002/ecs2.2598).

15. Xiafei Zheng, Yan Wang, Dongdong Zhang. 2019. Effects of microbial products and extra carbon on water quality and bacterial community in a fish polyculture system. Aquaculture Research 50: 1220-1229 (DOI: 10.1111/are.13996).