Publications in 2017

1. Cheng Wang, Da Dong, P. J. Strong, Weijing Zhu, Zhuang Ma, Yong Qin, Weixiang Wu. 2017. Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes. Microbiome 5: 103 (DOI: 10.1186/s40168-017-0324-0).

2. Linwei Wu, Yunfeng Yang, Si Chen, Zhou Jason Shi, Mengxin Zhao, Zhenwei Zhu, Sihang Yang, Yuanyuan Qu, Qiao Ma, Zhili He, Jizhong Zhou, Qiang He. 2017. Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters. ISME Journal 11: 2874-2878 (DOI: 10.1038/ismej.2017.135).

3. Linwei Wu, Yunfeng Yang, Shiping Wang, Haowei Yue, Qiaoyan Lin, Yigang Hu, Zhili He, Joy D Van Nostrand, Lauren Hale, Xiangzhen Li, Jack A Gilbert and Jizhong Zhou. 2017. Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling. ISME Journal 11: 2102-2111 (DOI: 10.1038/ismej.2017.75).

4. Lei Cheng, Naifang Zhang, Mengting Yuan, Jing Xiao, Yujia Qin, Ye Deng, Qichao Tu, Kai Xue, Joy D. Van Nostrand, Liyou Wu, Zhili He, Xuhui Zhou, Mary Beth Leigh, Konstantinos T. Konstantinidis, Edward AG Schuur, Yiqi Luo, James M. Tiedje, Jizhong Zhou. 2017. Warming enhances old organic carbon decomposition through altering functional microbial communities. ISME Journal 11: 1825-1835 (DOI: 10.1038/ismej.2017.48).

5. Zihao Wu, Kaiheng Guo, Jingyun Fang, Xueqin Yang, Hong Xiao, Shaodong Hou, Xiujuan Kong, Chii Shang, Xin Yang, Fangang Meng, Liwei Chen. 2017. Factors affecting the roles of reactive species in the degradation of micropollutants by the UV/chlorine process. Water Research 126: 351-360 (DOI: 10.1016/j.watres.2017.09.028).

6. Ping Zhang, Zhili He, Joy D Van Nostrand, Yujia Qin, Ye Deng, Liyou Wu, Qichao Tu, Jianjun Wang, Christopher W Schadt, Matthew W Fields, Terry C Hazen, Adam P Arkin, David A Stahl, Jizhong Zhou. 2017. Dynamic succession of groundwater sulfate-reducing communities during prolonged reduction of uranium in a contaminated aquifer. Environmental Science & Technology 51: 3609-3620 (DOI: 10.1021/acs.est.6b02980).

7. Zaisheng Yan, Yuhong He, Haiyuan Cai, Joy D Van Nostrand, Zhili He, Jizhong Zhou, Lee R Krumholz,  He-Long Jiang. 2017. Interconnection of key microbial functional genes for enhanced benzo[a]pyrene biodegradation in sediments by microbial electrochemistry. Environmental Science & Technology 51: 8519-8529 (DOI: 10.1021/acs.est.7b00209).

8. Aifen Zhou, Rebecca Lau, Richard Baran, Jincai Ma, Frederick von Netzer, Weiling Shi, Drew Gorman-Lewis, Megan L. Kempher, Zhili He, Yujia Qin, Zhou Shi, Grant M. Zane, Liyou Wu, Benjamin P. Bowen, Trent R. Northen, Kristina L. Hillesland, David A. Stahl, Judy D. Wall, Adam P. Arkin, Jizhong Zhou. 2017. Key metabolites and mechanistic changes for salt tolerance in an experimentally evolved sulfate-reducing bacterium Desulfovibrio vulgaris. mBio 8: e01780-17 (DOI: 10.1128/mBio.01780-17).

9. Xinfei Xie, Zhili He, Xiaojuan Hu, Huaqun Yin, Xueduan Liu, Yufeng Yang. 2017. Large-scale seaweed cultivation diverges water and sediment microbial communities in the coast of Nan'ao Island, South China Sea. Science of the Total Environment 598: 97-108 (DOI: 10.1016/j.scitotenv.2017.03.233).

10. Hui Li, Shan Yang, Zhuwen Xu, Qingyun Yan, Xiaobin Li, Joy D. van Nostrand, Zhili He, Fei Yao, Xingguo Han, Jizhong Zhou, Ye Deng, Yong Jiang. 2017. Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation. Soil Biology and Biochemistry 104: 18-29 (DOI: 10.1016/j.soilbio.2016.10.009).

11. Qichao Tu, Zhili He, Liyou Wu, Kai Xue, Gary Xie, Patrick Chain, Peter B. Reich, Sarah E. Hobbie, Jizhong Zhou. 2017. Metagenomic reconstruction of nitrogen cycling pathways in a CO2-enriched grassland ecosystem. Soil Biology and Biochemistry 106: 99-108 (DOI: 10.1016/j.soilbio.2016.12.017).

12. Hui Li, Shan Yang, Zhuwen Xu, Qingyun Yan, Xiaobin Li, Joy D. van Nostrand, Zhili He, Fei Yao, Xingguo Han, Jizhong Zhou, Ye Deng, Yong Jiang. 2017. Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation. Soil Biology and Biochemistry 104: 18-29 (DOI: 10.1016/j.soilbio.2016.10.009).

13. Qingyun Yan, James C. Stegen, Yuhe Yu, Ye Deng, Xinghao Li, Shu Wu, Lili Dai, Xiang Zhang, Jinjin Li, Chun Wang, Jiajia Ni, Xuemei Li, Hongjuan Hu, Fanshu Xiao, Weisong Feng, Daliang Ning, Zhili He, Joy D. Van Nostrand, Liyou Wu, Jizhong Zhou. 2017. Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China). Molecular Ecology 26: 3839-3850 (DOI: 10.1111/mec.14151).

14. Kai Feng, Zhaojing Zhang, Weiwei Cai, Wenzong Liu, Meiying Xu, Huaqun Yin, Aijie Wang, Zhili He, Ye Deng. 2017. Biodiversity and species competition regulate the resilience of microbial biofilm community. Molecular Ecology 26: 6170-6182 (DOI: 10.1111/mec.14356).

15. Yao Minjie, Rui Junpeng, Niu Haishan, Hedenec Petr, Li Jiabao, He Zhili, Wang Junming, Cao Weidong, Li Xiangzhen. 2017. The differentiation of soil bacterial communities along a precipitation and temperature gradient in the eastern Inner Mongolia steppe. Catena 152: 47-56 (DOI: 10.1016/j.catena.2017.01.007).

16. Qihong Lu, Ling Yu, Zhiwei Liang, Qingyun Yan, Zhili He, Tiangang Luan, Dawei Liang, Shanquan Wang. 2017. Dehalococcoides as a potential biomarker evidence for uncharacterized organohalides in environmental samples. Frontiers in Microbiology 8: 1677 (DOI: 10.3389/fmicb.2017.01677).

17. Dongwei Hou, Zhijian Huang, Shenzheng Zeng, Jian Liu, Dongdong Wei, Xisha Deng, Shaoping Weng, Zhili He, Jianguo He. 2017. Environmental factors shape water microbial community structure and function in shrimp culture ecosystems. Frontiers in Microbiology 8: (DOI: 10.3389/fmicb.2017.02359).

18. Qihong Lu, Ling Yu, Zhiwei Liang, Qingyun Yan, Zhili He, Tiangang Luan, Dawei Liang, Shanquan Wang. 2017. Dehalococcoides as a potential biomarker evidence for uncharacterized organohalides in environmental samples. Frontiers in Microbiology 8: 1677 (DOI: 10.3389/fmicb.2017.01677).

19. Yu Wang, Rui Zhang, Zhili He, Joy D. Van Nostrand, Qiang Zheng, Jizhong Zhou, Nianzhi Jiao. 2017. Functional gene diversity and metabolic potential of the microbial community in an estuary-shelf environment. Frontiers in Microbiology 8: 1153 (DOI: 10.3389/fmicb.2017.01153).

20. Weijing Zhu, Cheng Wang, Faqian Sun, Liancheng Zhao, Wenjie Dou, Weixiang Wu. 2017. Overall bacterial community composition and abundance of nitrifiers and denitrifiers in a typical macrotidal estuary. Marine Pollution Bulletin 126: 540-548 (DOI: 10.1016/j.marpolbul.2017.09.062).

21. Hongchun Zhang, Rui Wang, Shu Chen, Gaofu Qi, Zhili He, Xiuyun Zhao. 2017. Microbial taxa and functional genes shift in degraded soil with bacterial wilt. Scientific Reports 7: 39911 (DOI: 10.1038/srep39911).

22. Xiaojuan Hu, Guoliang Wen, Yucheng Cao, Yingxue Gong, Zhuojia Li, Zhili He, Yufeng Yang. 2017. Metabolic and phylogenetic profiles of microbial communities from a mariculture base on the Chinese Guangzhou coast. Reviews in Fisheries Science & Aquaculture 83: 465–477 (DOI: 10.1007/s12562-017-1073-5).

23. Chengjun Zhu, Fang Xiao, Yimin Qiu, Qin Wang, Zhili He, Shouwen Chen. 2017. Lichenysin production is improved in codY null Bacillus licheniformis by addition of precursor amino acids. Applied Microbiology and Biotechnology 101: 6375-6383 (DOI: 10.1007/s00253-017-8352-z).

24. Qichao Tu, Jiabao Li, Zhou Shi, Yanfei Chen, Lu Lin, Juan Li, Hongling Wang, Jianbo Yan, Qingming Zhou, Xiangzhen Li, Lanjuan Li, Jizhong Zhou, Zhili He. 2017. HuMiChip2 for strain level identification and functional profiling of human microbiomes. Applied Microbiology and Biotechnology 101: 423-435 (DOI: 10.1007/s00253-016-7910-0).

25. Xinghao Li, Li Zhou, Yuhe Yu, Jiajia Ni, Wenjie Xu, Qingyun Yan. 2017. Composition of Gut Microbiota in the Gibel Carp (Carassius auratus gibelio) Varies with Host Development. Microbial Ecology 74: 239-249 (DOI: 10.1007/s00248-016-0924-4).

26. Yunfu Gu, Joy D. Van Nostrand, Liyou Wu, Zhili He, Yujia Qin, Fang-Jie Zhao, Jizhong Zhou. 2017. Bacterial community and arsenic functional genes diversity in arsenic contaminated soils from different geographic locations. PLoS One 12: e0189656 (DOI: 10.1371/journal.pone.0189656).

27. Jiajia Ni, Xiaojing Li, Zhili He, Meiying Xu. 2017. A novel method to determine the minimum number of sequences required for reliable microbial community analysis. Journal of Microbiological Methods 139: 196-201 (DOI: 10.1016/j.mimet.2017.06.006).

28. Jiajia Ni, Qingyun Yan, Yuhe Yu, Hanhan Wu, Fang Chen. 2017. Dispersal patterns of endogenous bacteria among grass carp (Ctenopharyngodon idellus) guts. Iranian Journal of Fisheries Sciences 16: 605-618.